IL_8HL2_127

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGGUAAC*GGC

Length

10 nucleotides

Bulged bases

8HL2|1|A23S|G|1809

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_127 not in the Motif Atlas

Homologous match to IL_4V9F_059

Geometric discrepancy: 0.2935

The information below is about IL_4V9F_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.5

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

6

Unit IDs

8HL2|1|A23S|G|1807
8HL2|1|A23S|G|1808
8HL2|1|A23S|G|1809
8HL2|1|A23S|U|1810
8HL2|1|A23S|A|1811
8HL2|1|A23S|A|1812
8HL2|1|A23S|C|1813
*
8HL2|1|A23S|G|2133
8HL2|1|A23S|G|2134
8HL2|1|A23S|C|2135

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL3P

50S ribosomal protein L3

Chain L22P

50S ribosomal protein L22

Chain L31E

50S ribosomal protein L31e