IL_8HL2_133

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGCUAG*UGUGUACG

Length

14 nucleotides

Bulged bases

8HL2|1|A23S|U|1945, 8HL2|1|A23S|U|1960, 8HL2|1|A23S|C|1964

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_133 not in the Motif Atlas

Geometric match to IL_5TBW_083

Geometric discrepancy: 0.278

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8HL2|1|A23S|C|1942
8HL2|1|A23S|G|1943
8HL2|1|A23S|C|1944
8HL2|1|A23S|U|1945
8HL2|1|A23S|A|1946
8HL2|1|A23S|G|1947
*
8HL2|1|A23S|U|1958
8HL2|1|A23S|G|1959
8HL2|1|A23S|U|1960
8HL2|1|A23S|G|1961
8HL2|1|A23S|U|1962
8HL2|1|A23S|A|1963
8HL2|1|A23S|C|1964
8HL2|1|A23S|G|1965

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain A16S

Small subunit ribosomal RNA; SSU rRNA

Chain AL2P

50S ribosomal protein L2

Chain L37A

50S ribosomal protein L37Ae