IL_8HL2_153
3D structure
- PDB id
- 8HL2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- CAG*CGUAG
- Length
- 8 nucleotides
- Bulged bases
- 8HL2|1|A23S|U|2441
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8HL2_153 not in the Motif Atlas
- Homologous match to IL_4V9F_080
- Geometric discrepancy: 0.2832
- The information below is about IL_4V9F_080
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_14250.2
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 11
Unit IDs
8HL2|1|A23S|C|2419
8HL2|1|A23S|A|2420
8HL2|1|A23S|G|2421
*
8HL2|1|A23S|C|2439
8HL2|1|A23S|G|2440
8HL2|1|A23S|U|2441
8HL2|1|A23S|A|2442
8HL2|1|A23S|G|2443
Current chains
- Chain A23S
- 23s rRNA (3000-MER)
Nearby chains
- Chain A5S
- 5S ribosomal RNA; 5S rRNA
- Chain AL5P
- 50S ribosomal protein L5
- Chain L18P
- 50S ribosomal protein L18
- Chain L21E
- 50S ribosomal protein L21e
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