IL_8HL2_161

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

8HL2|1|A23S|G|2700, 8HL2|1|A23S|A|2701

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_161 not in the Motif Atlas

Geometric match to IL_5TBW_108

Geometric discrepancy: 0.1761

The information below is about IL_5TBW_108

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8HL2|1|A23S|C|2634
8HL2|1|A23S|U|2635
8HL2|1|A23S|C|2636
*
8HL2|1|A23S|G|2698
8HL2|1|A23S|U|2699
8HL2|1|A23S|G|2700
8HL2|1|A23S|A|2701
8HL2|1|A23S|G|2702

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL3P

50S ribosomal protein L3

Chain APTP

PHE-PHE-PHE-PHE-PHE-PHE

Chain L14P

50S ribosomal protein L14