IL_8HL2_173

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GG*UCC

Length

5 nucleotides

Bulged bases

8HL2|1|A23S|C|3005

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_173 not in the Motif Atlas

Geometric match to IL_7RQB_108

Geometric discrepancy: 0.2636

The information below is about IL_7RQB_108

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

8HL2|1|A23S|G|2952
8HL2|1|A23S|G|2953
*
8HL2|1|A23S|U|3004
8HL2|1|A23S|C|3005
8HL2|1|A23S|C|3006

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L31E

50S ribosomal protein L31e

Chain L47A

50S ribosomal protein L47A