IL_8HL2_176

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CAAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_176 not in the Motif Atlas

Homologous match to IL_4V9F_100

Geometric discrepancy: 0.1876

The information below is about IL_4V9F_100

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.3

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

47

Unit IDs

8HL2|1|A23S|C|2970
8HL2|1|A23S|A|2971
8HL2|1|A23S|A|2972
8HL2|1|A23S|G|2973
*
8HL2|1|A23S|C|2984
8HL2|1|A23S|G|2985
8HL2|1|A23S|A|2986
8HL2|1|A23S|G|2987

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AS8E

30S ribosomal protein S8e

Chain L19E

50S ribosomal protein L19e