IL_8HL2_182

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GAUC*GGC

Length

7 nucleotides

Bulged bases

8HL2|1|A5S|U|87

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_182 not in the Motif Atlas

Homologous match to IL_5TBW_378

Geometric discrepancy: 0.1701

The information below is about IL_5TBW_378

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8HL2|1|A5S|G|85
8HL2|1|A5S|A|86
8HL2|1|A5S|U|87
8HL2|1|A5S|C|88
*
8HL2|1|A5S|G|95
8HL2|1|A5S|G|96
8HL2|1|A5S|C|97

Current chains

Chain A5S

5s rRNA (122-MER)

Nearby chains

Chain A23S

Large subunit ribosomal RNA; LSU rRNA

Chain ALX0

50S ribosomal protein L18Ae

Chain L10E

50S ribosomal protein L10e

Chain L30P

50S ribosomal protein L30