IL_8HL2_193

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CCAAAUGCCUUG*CGCG

Length

16 nucleotides

Bulged bases

8HL2|1|A23S|A|2067, 8HL2|1|A23S|U|2073, 8HL2|1|A23S|C|2092

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_193 not in the Motif Atlas

Homologous match to IL_4V9F_071

Geometric discrepancy: 0.324

The information below is about IL_4V9F_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

8HL2|1|A23S|C|2063
8HL2|1|A23S|C|2064
8HL2|1|A23S|A|2065
8HL2|1|A23S|A|2066
8HL2|1|A23S|A|2067
8HL2|1|A23S|U|2068
8HL2|1|A23S|G|2069
8HL2|1|A23S|C|2070
8HL2|1|A23S|C|2071
8HL2|1|A23S|U|2072
8HL2|1|A23S|U|2073
8HL2|1|A23S|G|2074
*
8HL2|1|A23S|C|2090
8HL2|1|A23S|G|2091
8HL2|1|A23S|C|2092
8HL2|1|A23S|G|2093

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain A16S

Small subunit ribosomal RNA; SSU rRNA