IL_8HL4_102
3D structure
- PDB id
- 8HL4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.62 Å
Loop
- Sequence
- GUGACA*UAAC
- Length
- 10 nucleotides
- Bulged bases
- 8HL4|1|A23S|G|1003
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8HL4_102 not in the Motif Atlas
- Geometric match to IL_4V88_443
- Geometric discrepancy: 0.2734
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
8HL4|1|A23S|G|1001
8HL4|1|A23S|U|1002
8HL4|1|A23S|G|1003
8HL4|1|A23S|A|1004
8HL4|1|A23S|C|1005
8HL4|1|A23S|A|1006
*
8HL4|1|A23S|U|1045
8HL4|1|A23S|A|1046
8HL4|1|A23S|A|1047
8HL4|1|A23S|C|1048
Current chains
- Chain A23S
- 23s rRNA (3000-MER)
Nearby chains
- Chain A5S
- 5S ribosomal RNA; 5S rRNA
- Chain L10E
- 50S ribosomal protein L10e
- Chain L18P
- 50S ribosomal protein L18
- Chain L21E
- 50S ribosomal protein L21e
Coloring options: