IL_8HL4_116

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

CGC*GGUG

Length

7 nucleotides

Bulged bases

8HL4|1|A23S|G|1391

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL4_116 not in the Motif Atlas

Geometric match to IL_5TBW_057

Geometric discrepancy: 0.1412

The information below is about IL_5TBW_057

Detailed Annotation

Isolated cWS basepair

Broad Annotation

Isolated cWS basepair

Motif group

IL_73554.3

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

10

Unit IDs

8HL4|1|A23S|C|1340
8HL4|1|A23S|G|1341
8HL4|1|A23S|C|1342
*
8HL4|1|A23S|G|1390
8HL4|1|A23S|G|1391
8HL4|1|A23S|U|1392
8HL4|1|A23S|G|1393

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL4P

50S ribosomal protein L4

Chain L32E

50S ribosomal protein L32e