IL_8HL4_119

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

GGUAGUAA*UGAACGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL4_119 not in the Motif Atlas

Geometric match to IL_5TBW_116

Geometric discrepancy: 0.2099

The information below is about IL_5TBW_116

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8HL4|1|A23S|G|1405
8HL4|1|A23S|G|1406
8HL4|1|A23S|U|1407
8HL4|1|A23S|A|1408
8HL4|1|A23S|G|1409
8HL4|1|A23S|U|1410
8HL4|1|A23S|A|1411
8HL4|1|A23S|A|1412
*
8HL4|1|A23S|U|2140
8HL4|1|A23S|G|2141
8HL4|1|A23S|A|2142
8HL4|1|A23S|A|2143
8HL4|1|A23S|C|2144
8HL4|1|A23S|G|2145
8HL4|1|A23S|C|2146

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L22P

50S ribosomal protein L22