IL_8HL4_121

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

GCAACG*CAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL4_121 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.3835

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8HL4|1|A23S|G|1463
8HL4|1|A23S|C|1464
8HL4|1|A23S|A|1465
8HL4|1|A23S|A|1466
8HL4|1|A23S|C|1467
8HL4|1|A23S|G|1468
*
8HL4|1|A23S|C|1474
8HL4|1|A23S|A|1475
8HL4|1|A23S|G|1476
8HL4|1|A23S|C|1477

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L19E

50S ribosomal protein L19e

Chain L22P

50S ribosomal protein L22

Chain L39E

50S ribosomal protein L39e