IL_8HL4_122
3D structure
- PDB id
- 8HL4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.62 Å
Loop
- Sequence
- CUAAG*CGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 8HL4|1|A23S|A|1524, 8HL4|1|A23S|A|1525
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8HL4_122 not in the Motif Atlas
- Geometric match to IL_5TBW_063
- Geometric discrepancy: 0.1175
- The information below is about IL_5TBW_063
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
8HL4|1|A23S|C|1494
8HL4|1|A23S|U|1495
8HL4|1|A23S|A|1496
8HL4|1|A23S|A|1497
8HL4|1|A23S|G|1498
*
8HL4|1|A23S|C|1521
8HL4|1|A23S|G|1522
8HL4|1|A23S|A|1523
8HL4|1|A23S|A|1524
8HL4|1|A23S|A|1525
8HL4|1|A23S|G|1526
Current chains
- Chain A23S
- 23s rRNA (3000-MER)
Nearby chains
- Chain AL2P
- 50S ribosomal protein L2
- Chain L34E
- 50S ribosomal protein L34e
- Chain L37E
- 50S ribosomal protein L37e
- Chain L39E
- 50S ribosomal protein L39e
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