IL_8HL4_128
3D structure
- PDB id
- 8HL4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.62 Å
Loop
- Sequence
- UGGAGAG*UGAGAAG
- Length
- 14 nucleotides
- Bulged bases
- 8HL4|1|A23S|A|1647, 8HL4|1|A23S|A|1660
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8HL4_128 not in the Motif Atlas
- Geometric match to IL_5TBW_073
- Geometric discrepancy: 0.3334
- The information below is about IL_5TBW_073
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
8HL4|1|A23S|U|1642
8HL4|1|A23S|G|1643
8HL4|1|A23S|G|1644
8HL4|1|A23S|A|1645
8HL4|1|A23S|G|1646
8HL4|1|A23S|A|1647
8HL4|1|A23S|G|1648
*
8HL4|1|A23S|U|1658
8HL4|1|A23S|G|1659
8HL4|1|A23S|A|1660
8HL4|1|A23S|G|1661
8HL4|1|A23S|A|1662
8HL4|1|A23S|A|1663
8HL4|1|A23S|G|1664
Current chains
- Chain A23S
- 23s rRNA (3000-MER)
Nearby chains
- Chain L141
- 50S ribosomal protein L14e
- Chain L19E
- 50S ribosomal protein L19e
- Chain L30E
- 50S ribosomal protein L30e
- Chain L37A
- 50S ribosomal protein L37Ae
- Chain S15P
- 30S ribosomal protein S15
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