IL_8HL4_154

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

CAG*CGUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL4_154 not in the Motif Atlas

Geometric match to IL_5TBW_099

Geometric discrepancy: 0.1791

The information below is about IL_5TBW_099

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_71241.2

Basepair signature

cWW-cWW-tSH-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8HL4|1|A23S|C|2419
8HL4|1|A23S|A|2420
8HL4|1|A23S|G|2421
*
8HL4|1|A23S|C|2439
8HL4|1|A23S|G|2440
8HL4|1|A23S|U|2441
8HL4|1|A23S|A|2442
8HL4|1|A23S|G|2443

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain A5S

5S ribosomal RNA; 5S rRNA

Chain AL5P

50S ribosomal protein L5

Chain L18P

50S ribosomal protein L18