IL_8HL4_171

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

GUAAC*GGAAC

Length

10 nucleotides

Bulged bases

8HL4|1|A23S|A|2887

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL4_171 not in the Motif Atlas

Geometric match to IL_5TBW_120

Geometric discrepancy: 0.1846

The information below is about IL_5TBW_120

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

8HL4|1|A23S|G|2860
8HL4|1|A23S|U|2861
8HL4|1|A23S|A|2862
8HL4|1|A23S|A|2863
8HL4|1|A23S|C|2864
*
8HL4|1|A23S|G|2884
8HL4|1|A23S|G|2885
8HL4|1|A23S|A|2886
8HL4|1|A23S|A|2887
8HL4|1|A23S|C|2888

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL6P

50S ribosomal protein L6

Chain L13P

50S ribosomal protein L13

Chain L40E

50S ribosomal protein L40E