IL_8HSP_132

3D structure

PDB id

8HSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8HSP|1|a|A|1801, 8HSP|1|a|C|1816, 8HSP|1|a|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HSP_132 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0585

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8HSP|1|a|U|1798
8HSP|1|a|G|1799
8HSP|1|a|C|1800
8HSP|1|a|A|1801
8HSP|1|a|A|1802
8HSP|1|a|A|1803
8HSP|1|a|C|1804
*
8HSP|1|a|G|1813
8HSP|1|a|G|1814
8HSP|1|a|A|1815
8HSP|1|a|C|1816
8HSP|1|a|G|1817
8HSP|1|a|U|1818
8HSP|1|a|A|1819
8HSP|1|a|U|1820
8HSP|1|a|A|1821

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

50S ribosomal protein L2