IL_8HSP_163

3D structure

PDB id

8HSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

8HSP|1|a|U|2689, 8HSP|1|a|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HSP_163 not in the Motif Atlas

Homologous match to IL_5J7L_348

Geometric discrepancy: 0.0676

The information below is about IL_5J7L_348

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

8HSP|1|a|U|2687
8HSP|1|a|G|2688
8HSP|1|a|U|2689
8HSP|1|a|U|2690
8HSP|1|a|C|2691
*
8HSP|1|a|G|2718
8HSP|1|a|G|2719
8HSP|1|a|U|2720
8HSP|1|a|A|2721
8HSP|1|a|G|2722

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain m

50S ribosomal protein L17

Chain o

50S ribosomal protein L19