3D structure

PDB id
8HTZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CUAAG*CGAAG
Length
10 nucleotides
Bulged bases
8HTZ|1|a|A|1156
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8HTZ_099 not in the Motif Atlas
Homologous match to IL_4WF9_036
Geometric discrepancy: 0.055
The information below is about IL_4WF9_036
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_38507.2
Basepair signature
cWW-tWH-L-tHS-cWW
Number of instances in this motif group
16

Unit IDs

8HTZ|1|a|C|998
8HTZ|1|a|U|999
8HTZ|1|a|A|1000
8HTZ|1|a|A|1001
8HTZ|1|a|G|1002
*
8HTZ|1|a|C|1153
8HTZ|1|a|G|1154
8HTZ|1|a|A|1155
8HTZ|1|a|A|1156
8HTZ|1|a|G|1157

Current chains

Chain a
23S rRNA

Nearby chains

Chain b
5S ribosomal RNA; 5S rRNA
Chain p
50S ribosomal protein L20
Chain q
50S ribosomal protein L21
Chain y
50S ribosomal protein L30

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1493 s