IL_8HTZ_134

3D structure

PDB id

8HTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8HTZ|1|a|A|1801, 8HTZ|1|a|C|1816, 8HTZ|1|a|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HTZ_134 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0525

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8HTZ|1|a|U|1798
8HTZ|1|a|G|1799
8HTZ|1|a|C|1800
8HTZ|1|a|A|1801
8HTZ|1|a|A|1802
8HTZ|1|a|A|1803
8HTZ|1|a|C|1804
*
8HTZ|1|a|G|1813
8HTZ|1|a|G|1814
8HTZ|1|a|A|1815
8HTZ|1|a|C|1816
8HTZ|1|a|G|1817
8HTZ|1|a|U|1818
8HTZ|1|a|A|1819
8HTZ|1|a|U|1820
8HTZ|1|a|A|1821

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

50S ribosomal protein L2