3D structure

PDB id
8HU1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and ct6A37 in classical state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.69 Å

Loop

Sequence
AAGAAG*CCACU
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8HU1_062 not in the Motif Atlas
Homologous match to IL_5J7L_063
Geometric discrepancy: 0.1059
The information below is about IL_5J7L_063
Detailed Annotation
Triple sheared related
Broad Annotation
Triple sheared
Motif group
IL_80231.1
Basepair signature
cWW-L-R-L-R-L-R-tHS-cWW
Number of instances in this motif group
2

Unit IDs

8HU1|1|A|A|1430
8HU1|1|A|A|1431
8HU1|1|A|G|1432
8HU1|1|A|A|1433
8HU1|1|A|A|1434
8HU1|1|A|G|1435
*
8HU1|1|A|C|1466
8HU1|1|A|C|1467
8HU1|1|A|A|1468
8HU1|1|A|C|1469
8HU1|1|A|U|1470

Current chains

Chain A
16S rRNA

Nearby chains

Chain T
30S ribosomal protein S20
Chain a
Large subunit ribosomal RNA; LSU rRNA
Chain o
50S ribosomal protein L19

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