IL_8HU1_132

3D structure

PDB id

8HU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and ct6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8HU1|1|a|A|1801, 8HU1|1|a|C|1816, 8HU1|1|a|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HU1_132 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0748

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8HU1|1|a|U|1798
8HU1|1|a|G|1799
8HU1|1|a|C|1800
8HU1|1|a|A|1801
8HU1|1|a|A|1802
8HU1|1|a|A|1803
8HU1|1|a|C|1804
*
8HU1|1|a|G|1813
8HU1|1|a|G|1814
8HU1|1|a|A|1815
8HU1|1|a|C|1816
8HU1|1|a|G|1817
8HU1|1|a|U|1818
8HU1|1|a|A|1819
8HU1|1|a|U|1820
8HU1|1|a|A|1821

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

50S ribosomal protein L2