IL_8I9P_014

3D structure

PDB id

8I9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Mak16

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUC*GUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9P_014 not in the Motif Atlas

Geometric match to IL_5TBW_129

Geometric discrepancy: 0.1737

The information below is about IL_5TBW_129

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8I9P|1|C1|C|175
8I9P|1|C1|U|176
8I9P|1|C1|U|177
8I9P|1|C1|C|178
*
8I9P|1|C1|G|225
8I9P|1|C1|U|226
8I9P|1|C1|U|227
8I9P|1|C1|G|228

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain C2

5.8S ribosomal RNA; 5.8S rRNA

Chain CR

Nucleolar protein 16

Chain LY

60S ribosomal protein L26-like protein

Chain Lj

Ribosomal protein L37