IL_8I9P_020

3D structure

PDB id

8I9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Mak16

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCG*CUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9P_020 not in the Motif Atlas

Geometric match to IL_4LFB_061

Geometric discrepancy: 0.1128

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8I9P|1|C1|G|434
8I9P|1|C1|C|435
8I9P|1|C1|G|436
*
8I9P|1|C1|C|480
8I9P|1|C1|U|481
8I9P|1|C1|C|482

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain Cd

Brix domain-containing protein

Chain Ce

Protein MAK16

Chain LE

60S ribosomal protein L6

Chain Le

60S ribosomal protein L32-like protein