IL_8I9P_021

3D structure

PDB id

8I9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Mak16

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUC*GCACU

Length

8 nucleotides

Bulged bases

8I9P|1|C1|U|446

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9P_021 not in the Motif Atlas

Geometric match to IL_7RQB_104

Geometric discrepancy: 0.1494

The information below is about IL_7RQB_104

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

8I9P|1|C1|A|445
8I9P|1|C1|U|446
8I9P|1|C1|C|447
*
8I9P|1|C1|G|467
8I9P|1|C1|C|468
8I9P|1|C1|A|469
8I9P|1|C1|C|470
8I9P|1|C1|U|471

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain Ce

Protein MAK16