IL_8I9P_042

3D structure

PDB id

8I9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Mak16

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCUU*GUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9P_042 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.3912

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

8I9P|1|C1|C|1050
8I9P|1|C1|C|1051
8I9P|1|C1|U|1052
8I9P|1|C1|U|1053
*
8I9P|1|C1|G|1069
8I9P|1|C1|U|1070
8I9P|1|C1|G|1071

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain LT

60S ribosomal protein l21-like protein