IL_8I9P_066

3D structure

PDB id

8I9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Mak16

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAU*AUUUG

Length

9 nucleotides

Bulged bases

8I9P|1|C1|U|757

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9P_066 not in the Motif Atlas

Geometric match to IL_6JDV_002

Geometric discrepancy: 0.3572

The information below is about IL_6JDV_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8I9P|1|C1|C|734
8I9P|1|C1|G|735
8I9P|1|C1|A|736
8I9P|1|C1|U|737
*
8I9P|1|C1|A|756
8I9P|1|C1|U|757
8I9P|1|C1|U|758
8I9P|1|C1|U|759
8I9P|1|C1|G|760

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CU

rRNA-processing protein EBP2