IL_8I9R_067

3D structure

PDB id

8I9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UU(OMU)U*AAUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9R_067 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.2481

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8I9R|1|C1|U|2680
8I9R|1|C1|U|2681
8I9R|1|C1|OMU|2682
8I9R|1|C1|U|2683
*
8I9R|1|C1|A|2691
8I9R|1|C1|A|2692
8I9R|1|C1|U|2693
8I9R|1|C1|A|2694

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain Cx

Ribosome biogenesis regulatory protein

Chain Cy

Ribosome production factor 2 homolog