IL_8I9T_046
3D structure
- PDB id
- 8I9T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CUCAUCAG*CUCAAG
- Length
- 14 nucleotides
- Bulged bases
- 8I9T|1|C1|U|1173, 8I9T|1|C1|C|1174, 8I9T|1|C1|C|1298, 8I9T|1|C1|A|1300
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8I9T_046 not in the Motif Atlas
- Geometric match to IL_5TBW_051
- Geometric discrepancy: 0.1441
- The information below is about IL_5TBW_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8I9T|1|C1|C|1169
8I9T|1|C1|U|1170
8I9T|1|C1|C|1171
8I9T|1|C1|A|1172
8I9T|1|C1|U|1173
8I9T|1|C1|C|1174
8I9T|1|C1|A|1175
8I9T|1|C1|G|1176
*
8I9T|1|C1|C|1296
8I9T|1|C1|U|1297
8I9T|1|C1|C|1298
8I9T|1|C1|A|1299
8I9T|1|C1|A|1300
8I9T|1|C1|G|1301
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CK
- Ribosome biogenesis protein NSA2 homolog
- Chain CL
- Putative GTP binding protein
- Chain LH
- 60S ribosomal protein l9-like protein
- Chain LM
- 60S ribosomal protein L14-like protein
- Chain LO
- 60S ribosomal protein L16-like protein
- Chain LS
- 60S ribosomal protein L20
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