IL_8I9T_057

3D structure

PDB id

8I9T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAAUUUGAU*AG

Length

12 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9T_057 not in the Motif Atlas

Geometric match to IL_4V88_392

Geometric discrepancy: 0.1737

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8I9T|1|C1|C|1433
8I9T|1|C1|A|1434
8I9T|1|C1|A|1435
8I9T|1|C1|A|1436
8I9T|1|C1|U|1437
8I9T|1|C1|U|1855
8I9T|1|C1|U|1856
8I9T|1|C1|G|1857
8I9T|1|C1|A|1858
8I9T|1|C1|U|1859
*
8I9T|1|C1|A|2314
8I9T|1|C1|G|2315

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain Cf

60S ribosome biogenesis protein Rrp14

Chain LP

60S ribosomal protein l17-like protein