IL_8I9T_081

3D structure

PDB id

8I9T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

8I9T|1|C1|U|3013, 8I9T|1|C1|U|3015

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9T_081 not in the Motif Atlas

Homologous match to IL_8C3A_127

Geometric discrepancy: 0.2022

The information below is about IL_8C3A_127

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

8I9T|1|C1|U|3011
8I9T|1|C1|U|3012
8I9T|1|C1|U|3013
8I9T|1|C1|U|3014
8I9T|1|C1|U|3015
8I9T|1|C1|G|3016
*
8I9T|1|C1|C|3041
8I9T|1|C1|G|3042
8I9T|1|C1|A|3043
8I9T|1|C1|A|3044
8I9T|1|C1|G|3045

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CQ

Ribosome biogenesis protein RLP24

Chain Cg

Brix domain-containing protein

Chain LB

60S ribosomal protein L3-like protein