IL_8I9W_049
3D structure
- PDB id
- 8I9W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCUUGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 8I9W|1|C1|U|1203
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8I9W_049 not in the Motif Atlas
- Homologous match to IL_8C3A_057
- Geometric discrepancy: 0.2599
- The information below is about IL_8C3A_057
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90538.5
- Basepair signature
- cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
8I9W|1|C1|U|1200
8I9W|1|C1|C|1201
8I9W|1|C1|U|1202
8I9W|1|C1|U|1203
8I9W|1|C1|G|1204
8I9W|1|C1|A|1205
8I9W|1|C1|C|1206
8I9W|1|C1|A|1207
8I9W|1|C1|G|1208
*
8I9W|1|C1|C|1265
8I9W|1|C1|C|1266
8I9W|1|C1|G|1267
8I9W|1|C1|A|1268
8I9W|1|C1|A|1269
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CF
- Ribosome assembly factor mrt4
- Chain Cz
- rRNA-processing protein
Coloring options: