IL_8I9W_079
3D structure
- PDB id
- 8I9W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAAUU*ACCA
- Length
- 9 nucleotides
- Bulged bases
- 8I9W|1|C1|C|3049, 8I9W|1|C1|C|3050
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8I9W_079 not in the Motif Atlas
- Homologous match to IL_5TBW_117
- Geometric discrepancy: 0.0893
- The information below is about IL_5TBW_117
- Detailed Annotation
- Major groove minor groove platform with tHH
- Broad Annotation
- No text annotation
- Motif group
- IL_14592.1
- Basepair signature
- cWW-tHH-cWW-L-L
- Number of instances in this motif group
- 4
Unit IDs
8I9W|1|C1|U|3004
8I9W|1|C1|A|3005
8I9W|1|C1|A|3006
8I9W|1|C1|U|3007
8I9W|1|C1|U|3008
*
8I9W|1|C1|A|3048
8I9W|1|C1|C|3049
8I9W|1|C1|C|3050
8I9W|1|C1|A|3051
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CQ
- Ribosome biogenesis protein RLP24
- Chain LB
- 60S ribosomal protein L3-like protein
- Chain LV
- 60S ribosomal protein l23-like protein
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