IL_8I9W_098
3D structure
- PDB id
- 8I9W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UG*UGAA
- Length
- 6 nucleotides
- Bulged bases
- 8I9W|1|C2|G|212, 8I9W|1|C2|A|213
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8I9W_098 not in the Motif Atlas
- Geometric match to IL_4V88_392
- Geometric discrepancy: 0.2105
- The information below is about IL_4V88_392
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_82107.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 34
Unit IDs
8I9W|1|C2|U|184
8I9W|1|C2|G|185
*
8I9W|1|C2|U|211
8I9W|1|C2|G|212
8I9W|1|C2|A|213
8I9W|1|C2|A|214
Current chains
- Chain C2
- RNA (319-MER)
Nearby chains
- Chain CB
- Ribosome biogenesis protein C8F11.04
- Chain CE
- RNA helicase
- Chain CI
- Putative RNA-binding protein
- Chain CM
- 60S ribosomal protein l7-like protein
- Chain LG
- 60S ribosomal protein L8
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