IL_8I9Y_022

3D structure

PDB id

8I9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAUGUGG*UGUUAUAGC

Length

17 nucleotides

Bulged bases

8I9Y|1|C1|U|525, 8I9Y|1|C1|U|547

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9Y_022 not in the Motif Atlas

Homologous match to IL_5TBW_020

Geometric discrepancy: 0.1805

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8I9Y|1|C1|G|522
8I9Y|1|C1|A|523
8I9Y|1|C1|A|524
8I9Y|1|C1|U|525
8I9Y|1|C1|G|526
8I9Y|1|C1|U|527
8I9Y|1|C1|G|528
8I9Y|1|C1|G|529
*
8I9Y|1|C1|U|542
8I9Y|1|C1|G|543
8I9Y|1|C1|U|544
8I9Y|1|C1|U|545
8I9Y|1|C1|A|546
8I9Y|1|C1|U|547
8I9Y|1|C1|A|548
8I9Y|1|C1|G|549
8I9Y|1|C1|C|550

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain Cz

rRNA-processing protein

Chain LM

60S ribosomal protein L14-like protein

Chain LS

60S ribosomal protein L20