IL_8I9Y_074
3D structure
- PDB id
- 8I9Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGGAAAC*GGAGAUA
- Length
- 14 nucleotides
- Bulged bases
- 8I9Y|1|C1|A|1695, 8I9Y|1|C1|A|1708
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8I9Y_074 not in the Motif Atlas
- Homologous match to IL_5TBW_073
- Geometric discrepancy: 0.1626
- The information below is about IL_5TBW_073
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
8I9Y|1|C1|U|1690
8I9Y|1|C1|G|1691
8I9Y|1|C1|G|1692
8I9Y|1|C1|A|1693
8I9Y|1|C1|A|1694
8I9Y|1|C1|A|1695
8I9Y|1|C1|C|1696
*
8I9Y|1|C1|G|1706
8I9Y|1|C1|G|1707
8I9Y|1|C1|A|1708
8I9Y|1|C1|G|1709
8I9Y|1|C1|A|1710
8I9Y|1|C1|U|1711
8I9Y|1|C1|A|1712
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CC
- Ribosome biogenesis protein ERB1
- Chain LR
- Ribosomal protein L19
- Chain LZ
- 60S ribosomal protein L27
- Chain Lc
- 60S ribosomal protein l30-like protein
Coloring options: