IL_8I9Z_067
3D structure
- PDB id
- 8I9Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGAAC*GGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8I9Z_067 not in the Motif Atlas
- Homologous match to IL_8C3A_073
- Geometric discrepancy: 0.155
- The information below is about IL_8C3A_073
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_95716.2
- Basepair signature
- cWW-cWW-tHS-tHS-tSH-cWW
- Number of instances in this motif group
- 18
Unit IDs
8I9Z|1|C1|U|1624
8I9Z|1|C1|G|1625
8I9Z|1|C1|A|1626
8I9Z|1|C1|A|1627
8I9Z|1|C1|C|1628
*
8I9Z|1|C1|G|1785
8I9Z|1|C1|G|1786
8I9Z|1|C1|G|1787
8I9Z|1|C1|A|1788
8I9Z|1|C1|G|1789
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CJ
- Pescadillo homolog
- Chain CM
- 60S ribosomal protein l7-like protein
- Chain LZ
- 60S ribosomal protein L27
- Chain Lg
- Ribosomal protein l34-like protein
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