3D structure

PDB id
8IBY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of R2 with 5'ORF
Experimental method
ELECTRON MICROSCOPY
Resolution
3.47 Å

Loop

Sequence
UG*UCAA
Length
6 nucleotides
Bulged bases
8IBY|1|E|C|186, 8IBY|1|E|A|187
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8IBY_009 not in the Motif Atlas
Geometric match to IL_6CZR_119
Geometric discrepancy: 0.3699
The information below is about IL_6CZR_119
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_33761.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
4

Unit IDs

8IBY|1|E|U|175
8IBY|1|E|G|176
*
8IBY|1|E|U|185
8IBY|1|E|C|186
8IBY|1|E|A|187
8IBY|1|E|A|188

Current chains

Chain E
5'ORF RNA

Nearby chains

Chain C
Reverse transcriptase-like protein

Coloring options:


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