IL_8IDY_036

3D structure

PDB id

8IDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8IDY|1|2|G|748, 8IDY|1|2|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IDY_036 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1987

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8IDY|1|2|G|745
8IDY|1|2|A|746
8IDY|1|2|A|747
8IDY|1|2|G|748
8IDY|1|2|G|749
8IDY|1|2|U|750
8IDY|1|2|G|751
8IDY|1|2|G|752
*
8IDY|1|2|U|911
8IDY|1|2|G|912
8IDY|1|2|U|913
8IDY|1|2|U|914
8IDY|1|2|A|915
8IDY|1|2|C|916
8IDY|1|2|A|917
8IDY|1|2|G|918
8IDY|1|2|C|919

Current chains

Chain 2

28S rRNA

Nearby chains

Chain R

Translation machinery-associated protein 16

Chain S

60S ribosomal protein L14

Chain b

60S ribosomal protein L18a