IL_8IDY_045

3D structure

PDB id

8IDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCG*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IDY_045 not in the Motif Atlas

Geometric match to IL_5Z1I_002

Geometric discrepancy: 0.2847

The information below is about IL_5Z1I_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

8IDY|1|2|U|1100
8IDY|1|2|C|1167
8IDY|1|2|G|1168
*
8IDY|1|2|C|1193
8IDY|1|2|G|1194
8IDY|1|2|G|1195

Current chains

Chain 2

28S rRNA

Nearby chains

Chain R

Translation machinery-associated protein 16