IL_8IDY_079

3D structure

PDB id

8IDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

8IDY|1|2|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IDY_079 not in the Motif Atlas

Homologous match to IL_5TBW_054

Geometric discrepancy: 0.4253

The information below is about IL_5TBW_054

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8IDY|1|2|U|1957
8IDY|1|2|A|1958
8IDY|1|2|U|1959
8IDY|1|2|A|1960
8IDY|1|2|G|1961
8IDY|1|2|A|1962
8IDY|1|2|C|1963
8IDY|1|2|A|1964
8IDY|1|2|G|1965
*
8IDY|1|2|C|2022
8IDY|1|2|C|2023
8IDY|1|2|G|2024
8IDY|1|2|A|2025
8IDY|1|2|A|2026

Current chains

Chain 2

28S rRNA

Nearby chains

Chain J

mRNA turnover protein 4 homolog

Chain R

Translation machinery-associated protein 16

Chain b

60S ribosomal protein L18a