IL_8IFD_036
3D structure
- PDB id
- 8IFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- GAAGGUGG*UGUUACAGC
- Length
- 17 nucleotides
- Bulged bases
- 8IFD|1|1A|G|748, 8IFD|1|1A|C|916
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IFD_036 not in the Motif Atlas
- Geometric match to IL_5TBW_020
- Geometric discrepancy: 0.1598
- The information below is about IL_5TBW_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07703.1
- Basepair signature
- cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8IFD|1|1A|G|745
8IFD|1|1A|A|746
8IFD|1|1A|A|747
8IFD|1|1A|G|748
8IFD|1|1A|G|749
8IFD|1|1A|U|750
8IFD|1|1A|G|751
8IFD|1|1A|G|752
*
8IFD|1|1A|U|911
8IFD|1|1A|G|912
8IFD|1|1A|U|913
8IFD|1|1A|U|914
8IFD|1|1A|A|915
8IFD|1|1A|C|916
8IFD|1|1A|A|917
8IFD|1|1A|G|918
8IFD|1|1A|C|919
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 2G
- 60S ribosomal protein L14
- Chain 2M
- 60S ribosomal protein L18a
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