IL_8IFD_090

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFD_090 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.0936

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8IFD|1|1A|G|2358
8IFD|1|1A|U|2359
8IFD|1|1A|A|2360
8IFD|1|1A|G|2361
8IFD|1|1A|U|2362
8IFD|1|1A|A|2363
8IFD|1|1A|G|2364
*
8IFD|1|1A|C|3858
8IFD|1|1A|G|3859
8IFD|1|1A|A|3860
8IFD|1|1A|A|3861
8IFD|1|1A|A|3862
8IFD|1|1A|C|3863

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1F

60S ribosomal protein L4

Chain 2J

60S ribosomal protein L17