IL_8IFD_144
3D structure
- PDB id
- 8IFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- CCAU*AGGCG
- Length
- 9 nucleotides
- Bulged bases
- 8IFD|1|1A|C|4720
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IFD_144 not in the Motif Atlas
- Homologous match to IL_8C3A_123
- Geometric discrepancy: 0.1632
- The information below is about IL_8C3A_123
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
8IFD|1|1A|C|4582
8IFD|1|1A|C|4583
8IFD|1|1A|A|4584
8IFD|1|1A|U|4585
*
8IFD|1|1A|A|4717
8IFD|1|1A|G|4718
8IFD|1|1A|G|4719
8IFD|1|1A|C|4720
8IFD|1|1A|G|4721
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1E
- 60S ribosomal protein L3
- Chain 2I
- 60S ribosomal protein L13a
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