IL_8IFD_167
3D structure
- PDB id
- 8IFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- GUUAGUAC*GGAAUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IFD_167 not in the Motif Atlas
- Homologous match to IL_8C3A_148
- Geometric discrepancy: 0.2944
- The information below is about IL_8C3A_148
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.9
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
8IFD|1|1B|G|71
8IFD|1|1B|U|72
8IFD|1|1B|U|73
8IFD|1|1B|A|74
8IFD|1|1B|G|75
8IFD|1|1B|U|76
8IFD|1|1B|A|77
8IFD|1|1B|C|78
*
8IFD|1|1B|G|98
8IFD|1|1B|G|99
8IFD|1|1B|A|100
8IFD|1|1B|A|101
8IFD|1|1B|U|102
8IFD|1|1B|A|103
8IFD|1|1B|C|104
Current chains
- Chain 1B
- 5S ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1G
- 60S ribosomal protein L5
- Chain 2A
- 60S ribosomal protein L7
- Chain 2D
- 60S ribosomal protein L10-like
- Chain 2M
- 60S ribosomal protein L18a
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