IL_8IFD_189
3D structure
- PDB id
- 8IFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 8IFD|1|2m|U|361, 8IFD|1|2m|C|399
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IFD_189 not in the Motif Atlas
- Homologous match to IL_8C3A_410
- Geometric discrepancy: 0.1389
- The information below is about IL_8C3A_410
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.1
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8IFD|1|2m|U|359
8IFD|1|2m|A|360
8IFD|1|2m|U|361
8IFD|1|2m|C|362
8IFD|1|2m|A|363
8IFD|1|2m|A|364
*
8IFD|1|2m|U|396
8IFD|1|2m|G|397
8IFD|1|2m|A|398
8IFD|1|2m|C|399
8IFD|1|2m|C|400
8IFD|1|2m|A|401
8IFD|1|2m|C|402
8IFD|1|2m|G|403
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2t
- 40S ribosomal protein S8
- Chain 2v
- 40S ribosomal protein S11
- Chain 3B
- 40S ribosomal protein S23
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