IL_8IFD_202

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

8IFD|1|2m|A|628

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFD_202 not in the Motif Atlas

Homologous match to IL_8C3A_425

Geometric discrepancy: 0.1941

The information below is about IL_8C3A_425

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.2

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8IFD|1|2m|G|611
8IFD|1|2m|U|612
8IFD|1|2m|G|613
8IFD|1|2m|C|614
8IFD|1|2m|C|615
8IFD|1|2m|A|616
8IFD|1|2m|G|617
*
8IFD|1|2m|C|624
8IFD|1|2m|G|625
8IFD|1|2m|G|626
8IFD|1|2m|U|627
8IFD|1|2m|A|628
8IFD|1|2m|A|629
8IFD|1|2m|U|630
8IFD|1|2m|U|631
8IFD|1|2m|C|632

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2p

40S ribosomal protein S3

Chain 3B

40S ribosomal protein S23

Chain 3Q

40S ribosomal protein S30