IL_8IFD_228

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

8IFD|1|2m|C|1215, 8IFD|1|2m|C|1216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFD_228 not in the Motif Atlas

Homologous match to IL_8C3A_449

Geometric discrepancy: 0.1488

The information below is about IL_8C3A_449

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.10

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

16

Unit IDs

8IFD|1|2m|A|1214
8IFD|1|2m|C|1215
8IFD|1|2m|C|1216
8IFD|1|2m|A|1217
*
8IFD|1|2m|U|1681
8IFD|1|2m|C|1682
8IFD|1|2m|C|1683
8IFD|1|2m|C|1684
8IFD|1|2m|U|1685

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2r

40S ribosomal protein S5

Chain 2x

40S ribosomal protein S16

Chain 3D

40S ribosomal protein S28