IL_8IFD_244
3D structure
- PDB id
- 8IFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- GUGCCUACC*GUAACC
- Length
- 15 nucleotides
- Bulged bases
- 8IFD|1|2m|G|1552, 8IFD|1|2m|C|1553, 8IFD|1|2m|C|1554, 8IFD|1|2m|C|1557, 8IFD|1|2m|A|1580, 8IFD|1|2m|C|1581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IFD_244 not in the Motif Atlas
- Homologous match to IL_8C3A_467
- Geometric discrepancy: 0.5981
- The information below is about IL_8C3A_467
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_37172.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8IFD|1|2m|G|1550
8IFD|1|2m|U|1551
8IFD|1|2m|G|1552
8IFD|1|2m|C|1553
8IFD|1|2m|C|1554
8IFD|1|2m|U|1555
8IFD|1|2m|A|1556
8IFD|1|2m|C|1557
8IFD|1|2m|C|1558
*
8IFD|1|2m|G|1577
8IFD|1|2m|U|1578
8IFD|1|2m|A|1579
8IFD|1|2m|A|1580
8IFD|1|2m|C|1581
8IFD|1|2m|C|1582
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 21
- 40S ribosomal protein S20
- Chain 2p
- 40S ribosomal protein S3
- Chain 2u
- 40S ribosomal protein S10
- Chain 3E
- 40S ribosomal protein S29
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