IL_8IFE_036

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8IFE|1|1A|G|748, 8IFE|1|1A|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_036 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1489

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8IFE|1|1A|G|745
8IFE|1|1A|A|746
8IFE|1|1A|A|747
8IFE|1|1A|G|748
8IFE|1|1A|G|749
8IFE|1|1A|U|750
8IFE|1|1A|G|751
8IFE|1|1A|G|752
*
8IFE|1|1A|U|911
8IFE|1|1A|G|912
8IFE|1|1A|U|913
8IFE|1|1A|U|914
8IFE|1|1A|A|915
8IFE|1|1A|C|916
8IFE|1|1A|A|917
8IFE|1|1A|G|918
8IFE|1|1A|C|919

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2G

60S ribosomal protein L14

Chain 2M

60S ribosomal protein L18a